Markov model of java versions for Biological Sequence Analysis of good reference

modhmmts
........\add_alphabet.c
........\cmdline_add_alphabet.c
........\cmdline_add_alphabet.h
........\cmdline_hmmsearch.c
........\cmdline_hmmsearch.h
........\cmdline_hmmtrain.c
........\cmdline_hmmtrain.h
........\cmdline_modseqalign.c
........\cmdline_modseqalign.h
........\core_algorithms_multialpha.c
........\debug_funcs.c
........\funcs.h
........\hmmsearch.c
........\hmmtrain.c
........\makefile
........\modhmmalign.c
........\modseqalign.c
........\opt_prfhmm.c
........\readhmm.c
........\readhmm_multialpha.c
........\readseqs_multialpha.c
........\savehmm.c
........\savehmm_multialpha.c
........\set_profile_hmm_parameters.c
........\std_calculation_funcs.c
........\std_funcs.c
........\structs.h
........\training_algorithms_multialpha.c

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