File list (Check if you may need any files):
alignment
.........\aa_seq.mat
.........\BLAST.m
.........\Chapter 7 Rapid alignment methods FASTA and BLAST.pdf
.........\dotplot.fig
.........\dotplot.jpg
.........\Dotplot.m
.........\dotplot.rar
.........\dotplot2.JPG
.........\DP_GlobalAlignment.m
.........\DP_LocalAlignment.m
.........\DynamicProgramming_Alignment.m
.........\FASTA.m
.........\geneseq.mat
.........\HoughTransform.m
.........\matlab.mat
.........\PWM.m
.........\seq.mat
.........\test.mat
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