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Title: BiologicalSequenceAnalysis Download
 Description: This book provides the first unified, up-to-date, and tutorial-level overview of sequence analysis methods, with particular emphasis on probabilistic modelling. Pairwise alignment, hidden Markov models, multiple alignment, profile searches, RNA secondary structure analysis, and phylogenetic inference are treated at length.
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Durbin et al - Biological Sequence Analysis (CUP 2002) no OCR.pdf
    

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