Calcium-Imaging GUI Built as a tool for R. Mooney s Lab, Duke University department of Neurobiology. This program accepts TIFF files and attempts to aid the user in the detection of active brain cells within the image. Once the user has selected and identified a number of cells, the time-dependent amplitude averages are outputted, giving the user a signal for each selected cell. For detailed operation instruction, see OperationManual_v2.pdf

CalciumImagingGUI-master
........................\.DS_Store
........................\CaImagingGUI.fig
........................\CaImagingGUI.m
........................\GUImethods
........................\..........\buttonDownFunction.m
........................\..........\changeThreshold.m
........................\..........\deleteSavedCell.m
........................\..........\drawBorders.m
........................\..........\drawManualROI.m
........................\..........\getCellMeans.m
........................\..........\getNewFileLocation.m
........................\..........\initialize.m
........................\..........\loadAndCompute2.m
........................\..........\loadAppData.m
........................\..........\overlayBorder.m
........................\..........\performButtonLoad.m
........................\..........\quicksaveROI.m
........................\..........\resetGUI.m
........................\..........\saveAppData.m
........................\..........\setInitialFilepath.m
........................\..........\showBorders.m
........................\..........\showCurrentData.m
........................\..........\slabCrossCorrImage.m
........................\..........\tiffread.m
........................\..........\userSaveROI.m
........................\OperationManual_v2.pdf
........................\README.rtf
........................\ROIdetection
........................\............\CellSort 1.1
........................\............\............\CellsortApplyFilter.m
........................\............\............\CellsortChoosePCs.m
........................\............\............\CellsortFindspikes.m
........................\............\............\CellsortICA.m
........................\............\............\CellsortICA_Optimize.m
........................\............\............\CellsortICA_Optimize.m~
........................\............\............\CellsortICAplot.m
........................\............\............\CellsortPCA.m
........................\............\............\CellsortPlotPCspectrum.m
........................\............\............\CellsortSegmentation.m
........................\............\............\README.rtf
........................\............\............\doc
........................\............\............\...\CellsortApplyFilter.html
........................\............\............\...\CellsortChoosePCs.html
........................\............\............\...\CellsortFindspikes.html
........................\............\............\...\CellsortICA.html
........................\............\............\...\CellsortICAplot.html
........................\............\............\...\CellsortPCA.html
........................\............\............\...\CellsortPlotPCspectrum.html
........................\............\............\...\CellsortSegmentation.html
........................\............\............\...\TacoHTMLEditTemp.html
........................\............\............\...\images
........................\............\............\...\......\Linking to Harvard Library E-Resources - Harvard College Library.webarchive
........................\............\............\...\......\Mukamel1a.jpg
........................\............\............\...\......\alpha.png
........................\............\............\...\......\c++.png
........................\............\............\...\......\c.png
........................\............\............\...\......\demoicon.gif
........................\............\............\...\......\down.png
........................\............\............\...\......\fortran.png
........................\............\............\...\......\hp.png
........................\............\............\...\......\left.png
........................\............\............\...\......\linux.png
........................\............\............\...\......\matlabicon.gif
........................\............\............\...\......\mex.png
........................\............\..........

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