The process of constructing and testing models, particularly those that incorporate significant prior knowledge, involves multiple steps that are currently very poorly integrated. We have developed SB-Pipeline to create an effective workflow based on open-source code, public standards and modern software practice.

DataRail
........\.DS_Store
__MACOSX
........\DataRail
........\........\._.DS_Store
DataRail\data
........\....\TemplateDataFiles
........\....\.................\1oHum_03hrs_pl02_17plex.txt
__MACOSX\DataRail\data
........\........\....\TemplateDataFiles
........\........\....\.................\._1oHum_03hrs_pl02_17plex.txt
DataRail\data\TemplateDataFiles\1oHum_03hrs_pl02_17plex.xls
__MACOSX\DataRail\data\TemplateDataFiles\._1oHum_03hrs_pl02_17plex.xls
DataRail\data\TemplateDataFiles\BD-LGA-12345-EGFexpHepG2.xls
__MACOSX\DataRail\data\TemplateDataFiles\._BD-LGA-12345-EGFexpHepG2.xls
DataRail\data\TemplateDataFiles\BT-LGA-12346-EGFexpHepG2.csv
__MACOSX\DataRail\data\TemplateDataFiles\._BT-LGA-12346-EGFexpHepG2.csv
DataRail\data\TemplateDataFiles\Example_names_for_Bioplex.csv
__MACOSX\DataRail\data\TemplateDataFiles\._Example_names_for_Bioplex.csv
DataRail\data\TemplateDataFiles\Example_names_for_Bioplex.txt
__MACOSX\DataRail\data\TemplateDataFiles\._Example_names_for_Bioplex.txt
DataRail\data\TemplateDataFiles\Example_names_for_Bioplex.xls
__MACOSX\DataRail\data\TemplateDataFiles\._Example_names_for_Bioplex.xls
DataRail\data\TemplateDataFiles\MatlabStructure-for-MD-LGA-11112-EGFInh17phFI-BLK.mat
__MACOSX\DataRail\data\TemplateDataFiles\._MatlabStructure-for-MD-LGA-11112-EGFInh17phFI-BLK.mat
DataRail\data\TemplateDataFiles\MD-LGA-11112-EGFInh17phFI-BLK-subfield.csv
__MACOSX\DataRail\data\TemplateDataFiles\._MD-LGA-11112-EGFInh17phFI-BLK-subfield.csv
DataRail\data\TemplateDataFiles\MD-LGA-11112-EGFInh17phFI-BLK.csv
__MACOSX\DataRail\data\TemplateDataFiles\._MD-LGA-11112-EGFInh17phFI-BLK.csv
DataRail\data\TemplateDataFiles\out.csv
__MACOSX\DataRail\data\TemplateDataFiles\._out.csv
........\........\....\._TemplateDataFiles
........\........\._data
DataRail\matlab
........\......\.DS_Store
__MACOSX\DataRail\matlab
........\........\......\._.DS_Store
DataRail\matlab\bugfix_get_gui_mainfcn.m
__MACOSX\DataRail\matlab\._bugfix_get_gui_mainfcn.m
DataRail\matlab\DataClasses
........\......\...........\@CodeHashArray
........\......\...........\..............\CodeHashArray.m
__MACOSX\DataRail\matlab\DataClasses
........\........\......\...........\@CodeHashArray
........\........\......\...........\..............\._CodeHashArray.m
DataRail\matlab\DataClasses\@CodeHashArray\dump.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\._dump.m
DataRail\matlab\DataClasses\@CodeHashArray\private
........\......\...........\..............\.......\adddepfun.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\private
........\........\......\...........\..............\.......\._adddepfun.m
DataRail\matlab\DataClasses\@CodeHashArray\private\getfun.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\private\._getfun.m
........\........\......\...........\..............\._private
DataRail\matlab\DataClasses\@CodeHashArray\put.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\._put.m
DataRail\matlab\DataClasses\@CodeHashArray\remove.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\._remove.m
DataRail\matlab\DataClasses\@CodeHashArray\subsasgn.m
__MACOSX\DataRail\matlab\DataClasses\@CodeHashArray\._subsasgn.m
........\........\......\...........\._@CodeHashArray
DataRail\matlab\DataClasses\@Data
........\......\...........\.....\copy.m
__MACOSX\DataRail\matlab\DataClasses\@Data
........\........\......\...........\.....\._copy.m
DataRail\matlab\DataClasses\@Data\Data.m
__MACOSX\DataRail\matlab\DataClasses\@Data\._Data.m
DataRail\matlab\DataClasses\@Data\display.m
__MACOSX\DataRail\matlab\DataClasses\@Data\._display.m
........\........\......\...........\._@Data
DataRail\matlab\DataClasses\@drArray
........\......\...........\........\drArray.m
__MACOSX\DataRail\matlab\DataClasses\@drArray
........\........\......\...........\........\._drArray.m
........\........\......\...........\._@drArray
DataRail\matlab\DataClasses\@GuiNotifier
........\......\...........\............\GuiNotifier.m
__MACOSX\DataRail\matlab\DataClasses\@GuiNotifier
........\........\......\...........\............\._GuiNotifier.m
DataRail\matlab\DataClasses\@Gui

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