cisgenome, cattle were to write a high-throughput nucleotide data analysis suite, including the motif, such as sequence alignment

cisgenome_v1
............\affymetrix
............\bin
............\...\affy_bar2txt.exe
............\...\CisModScan.exe
............\...\CisModule.exe
............\...\fasta_soft2hardmask.exe
............\...\file_bed2cod.exe
............\...\file_cod2bed.exe
............\...\file_eland2aln.exe
............\...\flexmodule_motif.exe
............\...\genome_getseqcs_c.exe
............\...\genome_getseq_c.exe
............\...\genome_regioncssummary.exe
............\...\genome_regionextend.exe
............\...\hts_aln2bar.exe
............\...\hts_aln2barv2.exe
............\...\hts_aln2window.exe
............\...\hts_alnshift2bar.exe
............\...\hts_peakdetectorv2.exe
............\...\hts_peakdetectorv2_2sample.exe
............\...\hts_windowsummaryv2.exe
............\...\hts_windowsummaryv2_2sample.exe
............\...\motifmap_consensusscan.exe
............\...\motifmap_consensusscan_genome.exe
............\...\motifmap_consensusscan_genome_enrich.exe
............\...\motifmap_consensusscan_genome_summary.exe
............\...\motifmap_getcluster.exe
............\...\motifmap_getsitearoundcs.exe
............\...\motifmap_matrixscan.exe
............\...\motifmap_matrixscan_genome.exe
............\...\motifmap_matrixscan_genome_enrich.exe
............\...\motifmap_matrixscan_genome_summary.exe
............\...\refgene_getlocationsummary.exe
............\...\refgene_getmatchedcontrol.exe
............\...\refgene_getnearestgene.exe
............\...\refgene_gettssaround.exe
............\...\reflocus_getneighborgenes.exe
............\...\region_overlap.exe
............\...\tablesorter.exe
............\...\tablesorter_str.exe
............\...\tilemapv2.exe
............\...\tilemapv2_importaffy.exe
............\...\tilemapv2_quantilenorm.exe
............\...\tilemapv2_regioninfo.exe
............\...\tilemapv2_regioninfo_integral.exe
............\...\tilemapv2_txt2bar.exe
............\browser
............\.......\display_server.exe
............\.......\wwwroot
............\.......\.......\about.html
............\.......\.......\cgb.css
............\.......\.......\popupmenu.js
............\.......\.......\sessions
............\.......\.......\........\cMyc_peak.ini
............\.......\.......\........\cMyc_peak2.ini
............\.......\.......\........\quest_peaks1w100.ini
............\.......\.......\........\quest_test.ini
............\.......\.......\........\rest_test.ini
............\.......\.......\temp





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