This is a biological model based on HMM multiple sequence alignment algorithm to achieve the linux version. hmmer

hmmer-2.3.2linux
................\00README
................\config.guess
................\config.sub
................\configure
................\COPYRIGHT
................\documentation
................\.............\man
................\.............\...\hmmalign.man
................\.............\...\hmmbuild.man
................\.............\...\hmmcalibrate.man
................\.............\...\hmmconvert.man
................\.............\...\hmmemit.man
................\.............\...\hmmer.man
................\.............\...\hmmfetch.man
................\.............\...\hmmindex.man
................\.............\...\hmmpfam.man
................\.............\...\hmmsearch.man
................\INSTALL
................\install-sh
................\LICENSE
................\Makefile.in
................\NOTES
................\squid
................\.....\00README
................\.....\a2m.c
................\.....\afetch_main.c
................\.....\aligneval.c
................\.....\alignio.c
................\.....\alistat_main.c
................\.....\clustal.c
................\.....\cluster.c
................\.....\compalign_main.c
................\.....\compstruct_main.c
................\.....\config.sub
................\.....\configure
................\.....\dayhoff.c
................\.....\eps.c
................\.....\file.c
................\.....\getopt.c
................\.....\gki.c
................\.....\gki.h
................\.....\gsi.c
................\.....\gsi.h
................\.....\gsi64.c
................\.....\gsi64.h
................\.....\hsregex.c
................\.....\install-sh
................\.....\iupac.c
................\.....\Makefile.in
................\.....\msa.c
................\.....\msa.h
................\.....\msf.c
................\.....\phylip.c
................\.....\revcomp.c
................\.....\revcomp_main.c
................\.....\rk.c
................\.....\rk.h
................\.....\selex.c
................\.....\seqencode.c
................\.....\seqsplit_main.c
................\.....\seqstat_main.c
................\.....\sfetch_main.c
................\.....\shuffle.c
................\.....\shuffle_main.c
................\.....\sindex_main.c
................\.....\sqerror.c
................\.....\sqfuncs.h
................\.....\sqio.c
................\.....\squid.h.in
................\.....\squidconf.h.in
................\.....\squidcore.c
................\.....\sreformat_main.c
................\.....\sre_ctype.c
................\.....\sre_math.c
................\.....\sre_random.c
................\.....\sre_random.h
................\.....\sre_string.c
................\.....\ssi.c
................\.....\ssi.h
................\.....\stack.c
................\.....\stockholm.c
................\.....\stockholm.h
................\.....\stopwatch.c
................\.....\stopwatch.h
................\.....\Testsuite
................\.....\.........\00README
................\.....\.........\bug-1-sfetch-paths
................\.....\.........\iospeed_main.c
................\.....\.........\Makefile.in
................\.....\.........\rndspeed_main.c
................\.....\.........\sqdconfig_main.c
................\.....\.........\testsuite.pm
................\.....\.........\x-base-afetch
................\.....\.........\x-base-alistat
................\.....\.........\x-base-seqstat
................\.....\.........\x-base-sfetch
................\.....\.........\x-base-shuffle
................\.....\.........\x-base-sindex
................\.....\.........\x-base-sreformat

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